random test points
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      max inclusive: 100
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: randomtestpoints
  on property: has parameter name
equivalent class: Restriction
  has value: 0
  on property: has default value

number of pseudoabsences
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: NumberOfPseudoAbsences
  on property: has parameter name

nu
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0010000000474974513
    with restrictions:
      max inclusive: 1.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: Nu
  on property: has parameter name
equivalent class: Restriction
  has value: 0.5
  on property: has default value

beta multiplier
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: betamultiplier
  on property: has parameter name
equivalent class: Restriction
  has value: 1.0
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
  on property: bound to value
  qualified cardinality: 1

randomisations
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      max inclusive: 1000
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: Randomisations
  on property: has parameter name
equivalent class: Restriction
  has value: 8
  on property: has default value

probabilisic output
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: ProbabilisticOutput
  on property: has parameter name

coef0
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 0.0
  on property: has default value
equivalent class: Restriction
  has value: Coef0
  on property: has parameter name

output format
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
    with restrictions:
      max inclusive: 2
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: OutputFormat
  on property: has parameter name
equivalent class: Restriction
  has value: 2
  on property: has default value

hinge threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: hingethreshold
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 15
  on property: has default value

quadratic
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: quadratic
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

convergence limit
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 0.01
  on property: has default value
equivalent class: Restriction
  has value: ConvergenceLimit
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 1.0
  on property: bound to value
  qualified cardinality: 1

maximum background
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: maximumbackground
  on property: has parameter name
equivalent class: Restriction
  has value: 10000
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1

adjust sample radius
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: adjustsampleradius
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0
  on property: has default value

auto features
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: AutoFeatures
  on property: has parameter name

max distance
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: MaxDistance
  on property: has parameter name
equivalent class: Restriction
  has value: 0.1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 1.0
  on property: bound to value
  qualified cardinality: 1

has parameter member
type: ObjectProperty

beta hinge
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: beta_hinge
  on property: has parameter name
equivalent class: Restriction
  has value: -1.0
  on property: has default value

nearest points
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: NearestPoints
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      max inclusive: 1000
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value

models under omission threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 10000
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: ModelsUnderOmissionThreshold
  on property: has parameter name
equivalent class: Restriction
  has value: 20
  on property: has default value

garp with best subsets parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: comission sample size
  intersection of: Restriction
    on property: has parameter member
    some values from: comission threshold
  intersection of: Restriction
    on property: has parameter member
    some values from: convergence limit
  intersection of: Restriction
    on property: has parameter member
    some values from: hard omission threshold
  intersection of: Restriction
    on property: has parameter member
    some values from: max generations
  intersection of: Restriction
    on property: has parameter member
    some values from: max threads
  intersection of: Restriction
    on property: has parameter member
    some values from: models under omission threshold
  intersection of: Restriction
    on property: has parameter member
    some values from: population size
  intersection of: Restriction
    on property: has parameter member
    some values from: resamples
  intersection of: Restriction
    on property: has parameter member
    some values from: total runs
  intersection of: Restriction
    on property: has parameter member
    some values from: training proportion

hinge
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: hinge
  on property: has parameter name
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

linear
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: linear
  on property: has parameter name
equivalent class: Restriction
  has value: 1
  on property: has default value

has default value
type: DatatypeProperty

response curves exponent
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: responsecurvesexponent
  on property: has parameter name
equivalent class: Restriction
  has value: 0
  on property: has default value

default prevalence
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 1.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0.5
  on property: has default value
equivalent class: Restriction
  has value: defaultprevalence
  on property: has parameter name

garp with best subsets desktop garp implementation parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: comission sample size
  intersection of: Restriction
    on property: has parameter member
    some values from: comission threshold
  intersection of: Restriction
    on property: has parameter member
    some values from: convergence limit
  intersection of: Restriction
    on property: has parameter member
    some values from: hard omission threshold
  intersection of: Restriction
    on property: has parameter member
    some values from: max generations
  intersection of: Restriction
    on property: has parameter member
    some values from: max threads
  intersection of: Restriction
    on property: has parameter member
    some values from: models under omission threshold
  intersection of: Restriction
    on property: has parameter member
    some values from: population size
  intersection of: Restriction
    on property: has parameter member
    some values from: resamples
  intersection of: Restriction
    on property: has parameter member
    some values from: total runs
  intersection of: Restriction
    on property: has parameter member
    some values from: training proportion

BIOCLIM
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: BIOCLIM
has algorithm name: Bioclim

training proportion
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 50.0
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 100.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: TrainingProportion
  on property: has parameter name

SVM
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: SVM
has algorithm name: Support Vector Machines

climate space model parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: min components
  intersection of: Restriction
    on property: has parameter member
    some values from: randomisations
  intersection of: Restriction
    on property: has parameter member
    some values from: standard deviations
  intersection of: Restriction
    on property: has parameter member
    some values from: verbose debugging

standard deviations
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: StandardDeviations
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: -10.0
    with restrictions:
      max inclusive: 10.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 2.0
  on property: has default value

OM MAXENT
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: OM_MAXENT
has algorithm name: Maximum Entropy - openModeller Implementation

garp parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: convergence limit
  intersection of: Restriction
    on property: has parameter member
    some values from: max generations
  intersection of: Restriction
    on property: has parameter member
    some values from: population size
  intersection of: Restriction
    on property: has parameter member
    some values from: resamples

min samples for quadratic
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 10
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: MinSamplesForQuadratic
  on property: has parameter name

product features
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: ProductFeatures
  on property: has parameter name

random seed
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: randomseed
  on property: has parameter name
equivalent class: Restriction
  has value: 0
  on property: has default value

threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: threshold
  on property: has parameter name

replicate type
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 2
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: replicatetype
  on property: has parameter name
equivalent class: Restriction
  has value: 0
  on property: has default value

product
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: product
  on property: has parameter name

hard omission threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: HardOmissionThreshold
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 100.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 100.0
  on property: has default value

pictures
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: pictures
  on property: has parameter name

per species results
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  has value: perspeciesresults
  on property: has parameter name

hinge features
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: HingeFeatures
  on property: has parameter name

svm type
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 2
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  has value: SvmType
  on property: has parameter name

extra polate
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: extrapolate
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

comission sample size
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: CommissionSampleSize
  on property: has parameter name
equivalent class: Restriction
  has value: 10000
  on property: has default value

beta categorical
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: beta_categorical
  on property: has parameter name
equivalent class: Restriction
  has value: -1.0
  on property: has default value

quadratic features
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: QuadraticFeatures
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

c
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: C
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1.0
  on property: has default value

number of background points
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 10000
  on property: has default value
equivalent class: Restriction
  has value: NumberOfBackgroundPoints
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 10000
  on property: bound to value
  qualified cardinality: 1

learning rate
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: LearningRate
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 1.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0.3
  on property: has default value

threshold features
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: ThresholdFeatures
  on property: has parameter name
equivalent class: Restriction
  has value: 1
  on property: has default value

write clamp grid
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: writeclampgrid
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value

autofeature
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: autofeature
  on property: has parameter name

population size
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 50
  on property: has default value
equivalent class: Restriction
  has value: PopulationSize
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      max inclusive: 500
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1

hidden layer neurons
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 14
  on property: has default value
equivalent class: Restriction
  has value: HiddenLayerNeurons
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1

distance type
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: DistanceType
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      max inclusive: 4
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value

use absences as background
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: UseAbsencesAsBackground
  on property: has parameter name
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

standard deviation cutoff
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: StandardDeviationCutoff
  on property: has parameter name
equivalent class: Restriction
  has value: 0.674
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
  on property: bound to value
  qualified cardinality: 1

GARP BS
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: GARP_BS
has algorithm name: GARP with Best Subsets

write plot data
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  has value: writeplotdata
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

lq2lqpt threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: lq2lqptthreshold
  on property: has parameter name
equivalent class: Restriction
  has value: 80
  on property: has default value

has algorithm code
type: DatatypeProperty

has algorithm name
type: DatatypeProperty

max threads
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
    with restrictions:
      max inclusive: 1024
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: MaxThreads
  on property: has parameter name

kernel type
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      max inclusive: 4
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 2
  on property: has default value
equivalent class: Restriction
  has value: KernelType
  on property: has parameter name

ELSEWeb Lifemapper Parameters Ontology
type: Ontology
license: http://creativecommons.org/licenses/by/3.0/
default language: en
contributor: Contributors are those that engage in discussions during the development of this ontology (in alphabetical order): deana pennington soren scott aimee stewart natalia villanueva-rosales
creator: http://cybershare.utep.edu
creator: ELSEWeb team
creator: Nicholas del Rio
description: The ELSEWeb Lifemapper parameters ontology provides auxiliary classes and instances that describe input parameters of Lifemapper modelling services. This ontology provides support for the ELSEWeb project(http://elseweb.cybershare.utep.edu/). website: http://elseweb.cybershare.utep.edu/ontologies email: nvillanuevarosales@utep.edu
issued: 2014-05-01
rights: free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/3.0/].
modified: 2015-09-24
preferred namespace prefix: elseweb-lifemapper-parameters
preferred namespace uri: http://ontology.cybershare.utep.edu/ELSEWeb/
imports: sio.owl
imports: dcat
version IRI: elseweb-lifemapper-parameters.owl
version info: 1.2

total runs
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: TotalRuns
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 10000
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 20
  on property: has default value

minimum error
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 0.5
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0.01
  on property: has default value
equivalent class: Restriction
  has value: MinimumError
  on property: has parameter name

bound to value
type: DatatypeProperty

l2lq threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 10
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: l2lqthreshold
  on property: has parameter name

beta threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: beta_threshold
  on property: has parameter name
equivalent class: Restriction
  has value: -1.0
  on property: has default value

GARP
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: GARP
has algorithm name: GARP

plots
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: plots
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value

momentum
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 0.05
  on property: has default value
equivalent class: Restriction
  has value: Momentum
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 1.0
  on property: bound to value
  qualified cardinality: 1

resamples
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: Resamples
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
    with restrictions:
      max inclusive: 100000
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 2500
  on property: has default value

min samples for hinge
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 15
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: MinSamplesForHinge
  on property: has parameter name

append to results file
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: appendtoresultsfile
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0
  on property: has default value

degree
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: Degree
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 3
  on property: has default value

output grids
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: outputgrids
  on property: has parameter name

write mess
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: writemess
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

fade by clamping
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  has value: fadebyclamping
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

artificial neuronal network parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: choice
  intersection of: Restriction
    on property: has parameter member
    some values from: epoch
  intersection of: Restriction
    on property: has parameter member
    some values from: hidden layer neurons
  intersection of: Restriction
    on property: has parameter member
    some values from: learning rate
  intersection of: Restriction
    on property: has parameter member
    some values from: minimum error
  intersection of: Restriction
    on property: has parameter member
    some values from: momentum

doclamp
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: doclamp
  on property: has parameter name
equivalent class: Restriction
  has value: 1
  on property: has default value

number of iterations
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 500
  on property: has default value
equivalent class: Restriction
  has value: NumberOfIterations
  on property: has parameter name

replicates
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: replicates
  on property: has parameter name
equivalent class: Restriction
  has value: 1
  on property: has default value

remove duplicates
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: removeduplicates
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value

min components
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      max inclusive: 20
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: MinComponents
  on property: has parameter name
equivalent class: Restriction
  has value: 1
  on property: has default value

beta lqp
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: beta_lqp
  on property: has parameter name
equivalent class: Restriction
  has value: -1.0
  on property: has default value

max generations
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 400
  on property: has default value
equivalent class: Restriction
  has value: MaxGenerations
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1

lifemapper parameters
type: Class
comment: A set of parameters required as an input to a specific modelling algorithm offered as a Web service by Lifemapper.
example: The set of parameters needed by the ANN algorithm.

terminate tolerance
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1.0E-5
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: TerminateTolerance
  on property: has parameter name

logscale
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: logscale
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 1
  on property: has default value

lifemapper algorithm
type: Class
comment: A species distribution modelling algorithm implemented in a service offered by Lifemapper.
example: ANN

environmental distance parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: distance type
  intersection of: Restriction
    on property: has parameter member
    some values from: max distance
  intersection of: Restriction
    on property: has parameter member
    some values from: nearest points

ANN
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: ANN
has algorithm name: Artificial Neural Network

comission threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
    with restrictions:
      max inclusive: 100.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: CommissionThreshold
  on property: has parameter name
equivalent class: Restriction
  has value: 50.0
  on property: has default value

epoch
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 5000000
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: Epoch
  on property: has parameter name

write background predictions
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  has value: writebackgroundpredictions
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

support vector machines parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: c
  intersection of: Restriction
    on property: has parameter member
    some values from: coef0
  intersection of: Restriction
    on property: has parameter member
    some values from: degree
  intersection of: Restriction
    on property: has parameter member
    some values from: gamma
  intersection of: Restriction
    on property: has parameter member
    some values from: kernel type
  intersection of: Restriction
    on property: has parameter member
    some values from: nu
  intersection of: Restriction
    on property: has parameter member
    some values from: number of pseudoabsences
  intersection of: Restriction
    on property: has parameter member
    some values from: probabilisic output
  intersection of: Restriction
    on property: has parameter member
    some values from: svm type

CSMBS
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: CSMBS
has algorithm name: Climate Space Model

maximum iterations
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: maximumiterations
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 500
  on property: has default value

choice
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: Choice
  on property: has parameter name

maximum entropy openmodeller implementation parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: auto features
  intersection of: Restriction
    on property: has parameter member
    some values from: hinge features
  intersection of: Restriction
    on property: has parameter member
    some values from: include presence points in background
  intersection of: Restriction
    on property: has parameter member
    some values from: min samples for hinge
  intersection of: Restriction
    on property: has parameter member
    some values from: min samples for product threshold
  intersection of: Restriction
    on property: has parameter member
    some values from: min samples for quadratic
  intersection of: Restriction
    on property: has parameter member
    some values from: number of background points
  intersection of: Restriction
    on property: has parameter member
    some values from: number of iterations
  intersection of: Restriction
    on property: has parameter member
    some values from: output format
  intersection of: Restriction
    on property: has parameter member
    some values from: product features
  intersection of: Restriction
    on property: has parameter member
    some values from: quadratic features
  intersection of: Restriction
    on property: has parameter member
    some values from: terminate tolerance
  intersection of: Restriction
    on property: has parameter member
    some values from: threshold features
  intersection of: Restriction
    on property: has parameter member
    some values from: use absences as background

DG GARP
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: DG_GARP
has algorithm name: GARP - DesktopGARP implementation

maximum entropy att implementation parameters
type: Class
subclass of: lifemapper parameters

convergence threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1.0E-5
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: double
    with restrictions:
      min inclusive: 0.0
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: convergencethreshold
  on property: has parameter name

bioclim parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: standard deviation cutoff

ATT MAXENT
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: ATT_MAXENT
has algorithm name: Maximum Entropy - ATT Implementation

gamma
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: Gamma
  on property: has parameter name
equivalent class: Restriction
  has value: 0.0
  on property: has default value

response curves
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: responsecurves
  on property: has parameter name
equivalent class: Restriction
  has value: 0
  on property: has default value

garp desktop garp implementation parameters
type: Class
subclass of: lifemapper parameters
equivalent class: Class
  intersection of: Restriction
    on property: has parameter member
    some values from: convergence limit
  intersection of: Restriction
    on property: has parameter member
    some values from: max generations
  intersection of: Restriction
    on property: has parameter member
    some values from: population size
  intersection of: Restriction
    on property: has parameter member
    some values from: resamples

verbose debugging
type: Class
subclass of: use absences as background
equivalent class: Restriction
  has value: VerboseDebugging
  on property: has parameter name
equivalent class: Restriction
  has value: 0
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

ENVDIST
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: ENVDIST
has algorithm name: Environmental Distance

jacknife
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: jackknife
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: 0
  on property: has default value

lifemapper parameter
type: Class
comment: An input parameter required to run an algorithm provided by Lifemapper in a web service.

DG GARP BS
type: lifemapper algorithm
type: NamedIndividual
has algorithm code: DG_GARP_BS
has algorithm name: GARP with Best Subsets - DesktopGARP implementation

min samples for product threshold
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 80
  on property: has default value
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 1
  on property: bound to value
  qualified cardinality: 1
equivalent class: Restriction
  has value: MinSamplesForProductThreshold
  on property: has parameter name

include presence points in background
type: Class
subclass of: lifemapper parameter
equivalent class: Restriction
  has value: 1
  on property: has default value
equivalent class: Restriction
  has value: IncludePresencePointsInBackground
  on property: has parameter name
equivalent class: Restriction
  on data range: Datatype
    on datatype: integer
    with restrictions:
      min inclusive: 0
    with restrictions:
      max inclusive: 1
  on property: bound to value
  qualified cardinality: 1

has parameter name
type: DatatypeProperty